top of page

Your certificate is now private

CertificateBackground.png

Certificate of Completion

ErdosHorizontal.png

THIS ACKNOWLEDGES THAT

HAS COMPLETED THE FALL 2024 DATA SCIENCE BOOT CAMP

Adam Busis

Roman Holowinsky, PhD

December 11, 2024

DIRECTOR

DATE

clear.png

TEAM

Genome Wide Association Studies on Mouse Data

Tony Macula, Adam Busis, Feride Kose, Mykhailo Kuian, Zachary Pollock

clear.png

Single Nucleotide Polymorphism (SNP or "snip") data has been used to discovery associations between genotype (genes) and phenotypes (physical features).
Here is a mouse data site:
https://phenome.jax.org/
and here is some data
https://phenome.jax.org/projects/Gatti2
genotype : https://phenome.jax.org/phenomedoc?name=QTL_Archive/gatti_2014/Gatti_2014_geno.csv
phenotype: https://phenome.jax.org/phenomedoc?name=QTL_Archive/gatti_2014/Gatti_2014_pheno.csv

The phenotype has individuals as rows and phenotypes as columns. The genotype file has individuals has columns and each marker (SNP) is a row.

We attempted to discover SNP relationships to phenotypes, specifically neutrophil counts.


Screen Shot 2022-06-03 at 11.31.35 AM.png
github URL
bottom of page