Your certificate is now private
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Certificate of Completion
![ErdosHorizontal.png](https://static.wixstatic.com/media/55f531_5a3b8885620c4f25b2d3edeca3ae2158~mv2.png/v1/fill/w_351,h_40,al_c,q_85,usm_0.66_1.00_0.01,enc_avif,quality_auto/ErdosHorizontal.png)
THIS ACKNOWLEDGES THAT
HAS COMPLETED THE FALL 2024 DATA SCIENCE BOOT CAMP
Adam Busis
Roman Holowinsky, PhD
December 11, 2024
DIRECTOR
DATE
![clear.png](https://static.wixstatic.com/media/55f531_b9f3f13ce3aa4af78af2cc6d3563b81b~mv2.png/v1/fill/w_3,h_3,al_c,lg_1,q_85,enc_avif,quality_auto/clear.png)
TEAM
Genome Wide Association Studies on Mouse Data
Tony Macula, Adam Busis, Feride Kose, Mykhailo Kuian, Zachary Pollock
![clear.png](https://static.wixstatic.com/media/55f531_b9f3f13ce3aa4af78af2cc6d3563b81b~mv2.png/v1/fill/w_3,h_3,al_c,lg_1,q_85,enc_avif,quality_auto/clear.png)
Single Nucleotide Polymorphism (SNP or "snip") data has been used to discovery associations between genotype (genes) and phenotypes (physical features).
Here is a mouse data site:
https://phenome.jax.org/
and here is some data
https://phenome.jax.org/projects/Gatti2
genotype : https://phenome.jax.org/phenomedoc?name=QTL_Archive/gatti_2014/Gatti_2014_geno.csv
phenotype: https://phenome.jax.org/phenomedoc?name=QTL_Archive/gatti_2014/Gatti_2014_pheno.csv
The phenotype has individuals as rows and phenotypes as columns. The genotype file has individuals has columns and each marker (SNP) is a row.
We attempted to discover SNP relationships to phenotypes, specifically neutrophil counts.
![](https://static.wixstatic.com/media/a994932411404ef3bb797ba005125f5d.png/v1/fill/w_45,h_45,al_c,q_85,usm_0.66_1.00_0.01,enc_avif,quality_auto/a994932411404ef3bb797ba005125f5d.png)
![](https://static.wixstatic.com/media/a994932411404ef3bb797ba005125f5d.png/v1/fill/w_45,h_45,al_c,q_85,usm_0.66_1.00_0.01,enc_avif,quality_auto/a994932411404ef3bb797ba005125f5d.png)
![](https://static.wixstatic.com/media/a994932411404ef3bb797ba005125f5d.png/v1/fill/w_45,h_45,al_c,q_85,usm_0.66_1.00_0.01,enc_avif,quality_auto/a994932411404ef3bb797ba005125f5d.png)