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Certificate of Completion
THIS ACKNOWLEDGES THAT
HAS COMPLETED THE FALL 2024 DATA SCIENCE BOOT CAMP
Mykhailo Kuian
Roman Holowinsky, PhD
December 11, 2024
DIRECTOR
DATE
TEAM
Genome Wide Association Studies on Mouse Data
Tony Macula, Adam Busis, Feride Kose, Mykhailo Kuian, Zachary Pollock
Single Nucleotide Polymorphism (SNP or "snip") data has been used to discovery associations between genotype (genes) and phenotypes (physical features).
Here is a mouse data site:
https://phenome.jax.org/
and here is some data
https://phenome.jax.org/projects/Gatti2
genotype : https://phenome.jax.org/phenomedoc?name=QTL_Archive/gatti_2014/Gatti_2014_geno.csv
phenotype: https://phenome.jax.org/phenomedoc?name=QTL_Archive/gatti_2014/Gatti_2014_pheno.csv
The phenotype has individuals as rows and phenotypes as columns. The genotype file has individuals has columns and each marker (SNP) is a row.
We attempted to discover SNP relationships to phenotypes, specifically neutrophil counts.