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Certificate of Completion

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THIS ACKNOWLEDGES THAT

HAS COMPLETED THE FALL 2025 DATA SCIENCE BOOT CAMP

Mustafain Ali

Roman Holowinsky, PhD

NOVEMBER 13, 2025

DIRECTOR

DATE

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TEAM

Predicting Antibiotic Resistance: Challenges, Findings, and Lessons Learned

Haejun Oh, Dominique Hughes, Tinghao Huang, Chiara Mattamira, Mustafain Ali

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Goal: Explore whether patient and microbiological data can be used to predict antibiotic resistance.

Dataset: https://datadryad.org/dataset/doi:10.5061/d

Motivation: Infections that could once be easily cured by simple antibiotics are becoming harder to treat due to emerging antibiotic resistance in bacteria. In clinical practice, physicians prescribe antibiotics based on prior experience and established guidelines while awaiting laboratory test results that confirm the effectiveness of those antibiotics.

Methods: Preprocess the dataset to remove duplicate entries, one-hot encode categorical variables, and keep unique patient IDs. We train six different models (dummy classifier, logistic regression, random forest, XGBoost, SVMs, and KNNs) and evaluate their accuracy, F1-score, precision, recall, and false negative rate and choose the best-performing one.

Real-world impact: Our project support clinicians in making data-informed antibiotic prescriptions while awaiting lab results.

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github URL

©2017-2026 by The Erdős Institute.

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