
Certificate of Completion
THIS ACKNOWLEDGES THAT
HAS COMPLETED THE FALL 2026 DEEP LEARNING BOOT CAMP
Pranjal Singh
Roman Holowinsky, PhD
November 15, 2026
DIRECTOR
DATE

TEAM
Automated Cell Image Counter with Deep Learning
Dingshan Deng,Pranjal Singh,Jungmin Seo,Ruiping Huang

Pathology labs, medical companies and research labs count cells routinely, but counting by hand takes about a minute for an image of 50 cells, is repetitive, and varies between people. We built a deep-learning tool that returns the cell count of a microscopy image, with a box around every cell so each count can be checked. On 500 annotated brightfield images from five sessions, our YOLO26n detector, fine-tuned on our labelled cells, counts 75 held-out test images with a mean absolute error of 1.6 cells per image (R² = 0.98). The baseline, the general-purpose Cellpose-SAM model with thresholds tuned on our training images, is off by 5.6 cells (R² = 0.74). Our model is also about 63 times faster (28.6 ms vs 1.8 s per image). Applied without retraining to synthetic images, it counts small, round cells almost exactly but misses large, irregular, touching ones. Cell images vary too widely for one general-purpose model, so we expect labs to fine-tune ours on their own images.
